sarkas.tools.observables.Thermodynamics

class sarkas.tools.observables.Thermodynamics

Thermodynamic functions.

Methods

Thermodynamics.__init__()
Thermodynamics.average_acf_slices_data()	Calculate the average and standard deviation of the observable autocorrelation function from the slices dataframe.
Thermodynamics.average_slices_data()	Calculate the average and standard deviation of the observable from the slices dataframe.
Thermodynamics.calc_acf_slice_data([...])	Calculate the observable acf for each slice.
Thermodynamics.calc_k_data()	Calculate and save Fourier space data.
Thermodynamics.calc_nkt_slices_data()	Calculate n(k,t) for each slice.
Thermodynamics.calc_slices_data()	Calculate the observable for each slice.
Thermodynamics.calc_vkt_slices_data()	Calculate v(k,t) for each slice.
Thermodynamics.calculate_beta_simulation([...])	Calculate the inverse temperature by taking the mean of the temperature time series.
Thermodynamics.calculate_beta_slices([ensemble])	Calculate the inverse temperature by taking the mean of the temperature time series.
Thermodynamics.calculate_corr_times([slices])
Thermodynamics.calculate_heat_capacity_simulation([...])	Calculate the specific heat capacity from the fluctuations of the energy.
Thermodynamics.calculate_heat_capacity_slices([...])	Calculate the specific heat capacity from the fluctuations of the energy.
Thermodynamics.compute([calculate_acf])	Routine for computing the observable.
Thermodynamics.compute_from_rdf(rdf, potential)	Calculate the correlational energy and correlation pressure using sarkas.tools.observables.RadialDistributionFunction.compute_sum_rule_integrals() method.
Thermodynamics.compute_kt_data([nkt_flag, ...])	Calculate Time dependent Fourier space quantities.
Thermodynamics.copy_params(params)
Thermodynamics.create_dirs_filenames()	Create the directories and filenames where to save dataframes.
Thermodynamics.from_dict(input_dict)	Update attributes from input dictionary.
Thermodynamics.from_pickle()	Read the observable's info from the pickle file.
Thermodynamics.grab_sim_data([phase])	Grab the pandas dataframe from the saved csv file.
Thermodynamics.initialize_hdf()
Thermodynamics.integrate_normalized_acf_squared(...)	Calculate the normalized correlation time as given by
Thermodynamics.parse([acf_data])	Grab the pandas dataframe from the saved csv file.
Thermodynamics.parse_acf()
Thermodynamics.parse_k_data()	Read in the precomputed Fourier space data.
Thermodynamics.parse_kt_data([nkt_flag, ...])	Read in the precomputed time dependent Fourier space data.
Thermodynamics.plot([scaling, acf, figname, ...])	Plot the observable by calling the pandas.DataFrame.plot() function and save the figure.
Thermodynamics.pretty_print_msg()	Create the message with the basic information of every observable
Thermodynamics.save_acf_hdf()
Thermodynamics.save_hdf()
Thermodynamics.save_kt_hdf([nkt_flag, vkt_flag])	Save the \(n(\mathbf{k},t)\) and/or \(\mathbf{v}(\mathbf{k},t)\) data of each slice to disk.
Thermodynamics.save_pickle()	Save the observable's info into a pickle file.
Thermodynamics.setup(params[, phase, no_slices])	Assign attributes from simulation's parameters.
Thermodynamics.setup_init(params[, phase, ...])	Assign Observables attributes and copy the simulation's parameters.
Thermodynamics.setup_multirun_dirs()	Set the attributes postprocessing_dir and dump_dirs_list.
Thermodynamics.temp_energy_plot(process[, ...])	Plot Temperature and Energy as a function of time with their cumulative sum and average.
Thermodynamics.update_args(**kwargs)	Update observable specific attributes and call update_finish() to save info.
Thermodynamics.update_finish()	Update the slice_steps, CCF's and DSF's attributes, and save pickle file with observable's info.