sarkas.tools.transport.TransportCoefficients

class sarkas.tools.transport.TransportCoefficients

Transport Coefficients parent.

Methods

TransportCoefficients.__init__()
TransportCoefficients.calculate_average_temperature(params)	Calculate the average temperature from the sarkas.tools.observables.Thermodynamics data.
TransportCoefficients.copy_params(params)
TransportCoefficients.create_df_filenames()	Create paths of the filenames of the dataframes.
TransportCoefficients.diffusion(observable)	Calculate the transport coefficient from the Green-Kubo formula.
TransportCoefficients.electrical_conductivity(...)	Calculate the transport coefficient from the Green-Kubo formula.
TransportCoefficients.get_observable_data(...)	Grab the autocorrelation function datasets by calling the observable's parse() method.
TransportCoefficients.initialize_dataframes(...)	Grab observables autocorrelation data and initialize the dataframes where to store the data.
TransportCoefficients.interdiffusion(observable)	Calculate the transport coefficient from the Green-Kubo formula
TransportCoefficients.make_directories()	Create directories where to save the transport coefficients.
TransportCoefficients.parse(observable)	Read the HDF files containing the transport coefficients.
TransportCoefficients.plot_tc(time, ...[, show])	Make dual plots with ACF and transport coefficient.
TransportCoefficients.pretty_print()
TransportCoefficients.pretty_print_msg()	Print to screen the location where data is stored and other relevant information.
TransportCoefficients.save_hdf()	Save the HDF dataframes to disk in the TransportCoefficient folder.
TransportCoefficients.setup(params, observable)	Parameters params (sarkas.core.Parameters) -- Simulation parameters.
TransportCoefficients.time_stamp(message, timing)	Print out to screen elapsed times.
TransportCoefficients.viscosity(observable)	Calculate the transport coefficient from the Green-Kubo formula